Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs230439 chr17:3244358 C/T 0.000207 173 18.1 25.87 26.88 KM Plot
PCPG rs230442 chr17:3245102 A/C 0.000207 173 18.1 25.87 26.88 KM Plot
PCPG rs230465 chr17:3257339 G/A 0.000213 172 18.1 25.92 26.88 KM Plot
PCPG rs230467 chr17:3258491 C/G 0.000226 172 18.1 25.87 27.2 KM Plot
PCPG rs230472 chr17:3266022 A/C 0.000226 172 18.1 25.43 27.27 KM Plot
PCPG rs230481 chr17:3274549 T/C 0.000245 170 18.1 25.92 26.88 KM Plot
PCPG rs2305171 chr2:239097140 G/A 2.92E-5 170 29.43 18.2 13.22 KM Plot
PCPG rs2306693 chr12:56680531 T/C 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs2306694 chr12:56680636 C/T 9.63E-8 178 0.8 27.33 25.35 KM Plot
PCPG rs2312957 chr16:8763218 C/G 0 178 25.47 23.53 3.17 KM Plot
PCPG rs2312959 chr16:8763255 C/A 0 178 25.47 23.53 3.17 KM Plot
PCPG rs2312960 chr16:8763256 A/G 0 178 25.47 23.53 3.17 KM Plot
PCPG rs2312961 chr16:8763431 C/T 0 178 25.47 23.53 3.17 KM Plot
PCPG rs231403 chr17:3271586 A/G 0.000248 170 18.1 25 27.2 KM Plot
PCPG rs231409 chr17:3252129 G/A 0.000226 171 18.1 25.87 26.88 KM Plot